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Journal: BMC Genomics
Article Title: Improved microarray gene expression profiling of virus-infected cells after removal of viral RNA
doi: 10.1186/1471-2164-9-221
Figure Lengend Snippet: Cross-hybridization of vRNA to array specific sequences . LR7 cells were either mock-infected or infected with MHV (MOI 10). The cells were incubated with ActD (20 μg/ml) 1 h prior to infection, and maintained in the presence of this drug throughout the experiment. Total RNA was isolated from mock- or MHV-infected cells at 6 h p.i. (A) A representative mRNA amplification plot of a total RNA sample derived from MHV-infected, ActD-treated cells at 6 h p.i. The arrow indicates the marker peak. (B) The scatter plot displays the average expression values from independent dye-swap hybridizations (n = 6) for each gene present on the arrays as described in legend of Fig.2. (C) The Venn diagram shows a comparison between the experiments in the absence or presence of ActD.
Article Snippet: Mouse slides containing 35,000 spots (32,101 70-mer oligonucleotides, and 2,891 control spots) were hybridized with 1 μg of each alternatively labeled cRNA target at 42°C for 16–20 h using LifterSlips (Erie Scientific) and
Techniques: Hybridization, Infection, Incubation, Isolation, Amplification, Derivative Assay, Marker, Expressing, Comparison